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Keto Pumpkin Pecan Muffins

Keto pumpkin pecan muffins with warm pumpkin spice and a buttery pecan streusel. The almond-flour batter bakes at 325°F, with an estimated 4.5g net carbs per muffin.
  • 4.5gnet carbs
  • 7.4gprotein
  • 40minutes
  • 12servings

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I love a buttery streusel on a muffin, and this one has pecans, cinnamon and a little salt mixed into the crumbs. The pumpkin base uses almond flour with a small amount of coconut flour, plus cream and eggs. Fill the liners nearly to the top, leaving room for the topping.

Use plain pumpkin puree, not sweetened pumpkin pie filling. The spice and sweetener are measured separately in the card. Keep the butter for the streusel cold, then work it into coarse crumbs so you can scatter the topping over each muffin.

Bake at 325°F for about 30–35 minutes, until the centers are set and a toothpick comes out without wet batter. Let the muffins cool before handling or storing them. The card uses untoasted pecans; there is no separate toasting step required.

The listed serving is one of the 12 muffins, with an estimated 4.5g net carbs including the streusel. Different sweeteners and ingredient brands change the estimate. For another pumpkin bake, try my pumpkin bread.

a fluffy pumpkin muffin with streusel topping in front of a pumpkin

A big fluffy pumpkin muffin topped with buttery, sweet and salty pecan streusel.

pumpkin batter scooped in a muffin pan

Scoop the batter almost to the top of each liner, leaving room for the streusel.

all the ingredients for pumpkin pecan muffins spread out

One cup of pumpkin puree spreads across all 12 muffins.

biting down on a fluffy keto muffin

If you like pecans, my low carb pecan pie mug cake is one of the most popular recipes on my site.

A Simpler Streusel Option

a bowl of pecan streusel topping next to the muffins

The pecan streusel is buttery, nutty, and sweet and salty at the same time. If you want to skip the almond flour and coconut flour, you can make it with just butter, sweetener, pecans, cinnamon, and salt. It still makes an excellent topping.

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The recipe

Keto Pumpkin Pecan Muffins

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Prep 10 min Cook 30 min Total 40 min Serves 12

Ingredients

Servings 12

Keto Pumpkin Pecan Muffins Ingredients

Pecan Streusel Ingredients

Step by Step Instructions

  1. Preheat oven

    Preheat oven to 325 degrees. Place muffin liners in a 12 cup muffin pan.

    Preheat the oven to 325 degrees
  2. Add pumpkin pecan mixture

    In a large bowl, add all the muffin batter ingredients and mix until combined.

    red 325 on a black background
  3. Add mixture to muffin pan

    Scoop mixture into each muffin liner, filling almost to the top leaving room to add the streusel.

    muffin batter in a bowl with egg shells next to it
  4. Add pecan streusel mixture

    To make the pecan streusel, add all the ingredients to a small bowl and cut in butter using a fork or pastry blender until coarse crumbles form.

    pumpkin muffin batter in muffin tin
  5. Apply streusel to the top

    Evenly distribute streusel on top of each muffin.

    pecan streusel topping next to muffin pan with pumpkin batter inside
  6. Bake it

    Bake at 325 degrees for about 30-35 minutes or until spongy. Remove from oven and let cool.

    keto pecan streusel topping on muffins

Nutrition

Per serving: 1 muffin

Calories
237
Fat
20.9g
Protein
7.4g
Total carbs
8.4g
Net carbs
4.5g

Nutrition is an estimate calculated from the ingredients listed. Brands vary, so check labels if you track closely.

Frequently Asked Questions

Should I toast the pecans before making the streusel?

The recipe card uses untoasted crushed pecans, which bake with the streusel. A separate toasting step is not required. If you choose toasted pecans as a variation, let them cool before adding them and watch the topping for excess browning.

Can I make these nut-free for someone with a tree nut allergy?

This recipe contains almond flour in both the muffin batter and the streusel, plus pecans in the topping. Replacing the pecans alone does not make it nut-free. A seed-flour substitution has not been established for this complete recipe. For a tree nut allergy, choose a recipe developed without those nuts and check every ingredient and cross-contact information.

Can I use less sweetener?

The base recipe uses ½ cup of the listed baking sweetener in the batter and ¼ cup in the streusel. Use those amounts for the original formula. Reducing the sweetener is a variation that can change sweetness and texture. Do not taste raw batter; it contains raw eggs and flour. Assess sweetness only after a sample has been fully baked.

Why do these bake at 325°F?

That is the temperature in the original method. Bake for about 30–35 minutes and check that the centers are set without wet batter. The topping should be golden rather than scorched.

How should I store leftover muffins?

Let the muffins cool completely before covering. Keep them refrigerated for a short storage period, or wrap and freeze individual muffins for up to three months for best quality. Thaw a portion when needed. Gentle oven warming can refresh the topping; microwave warming makes it softer. Reheating time depends on the muffin and appliance.

Can I make these dairy-free?

The batter contains heavy cream and the streusel contains butter. Both would need replacing. A complete dairy-free version has not been established here, so coconut cream and a firm butter substitute would be an experiment with a different texture and nutrition estimate.

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Reviews

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4.4 from 25 ratings, 13 written

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Replying to Dana

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Tricia

I always use my silicone muffin pan without liners, does the 325 temp and bake time still work, or does silicone need adjusting? Really hoping the pecan streusel still gets crispy on top.

Reply

Annie Lampella

Silicone runs slower than metal so I’d check at the regular time but plan for 3-5 extra minutes and use a toothpick. The streusel should still crisp, it’s sitting on top away from the pan surface where the heat hits it directly.

Reply

Rob Johnson

Press the streusel down before they go in, just a light tap. I kept getting clean tops with all the pecan crunch stuck to the liner, which defeats the point. Also added half a teaspoon of cardamom to the pumpkin pie spice and the flavor got noticeably more complex, a little floral without tipping into chai. These are solid as written but that’s my version now.

Reply

Annie Lampella

Cardamom is such a good call. I’m adding it to my next batch.

Reply

Heidi

Been stashing batches in the freezer. My son is 16 and won’t touch anything he knows is keto. Thawed one Thursday, streusel still crunched. Gone by Friday.

Reply

Annie Lampella

Streusel holding after a freeze is what I was most nervous about when I developed this. Oven at 300 is the key, microwave ruins it. Your son is my target demographic.

Reply

Dina

Does the two tablespoons of coconut flour actually do anything? I left it out on my second batch and the crumb collapsed. Hadn’t eaten a muffin in over a year before these, and now I can’t stop.

Reply

Annie Lampella

Dina, your second batch proved it. Coconut flour absorbs the moisture from the pumpkin and eggs in a way almond flour can’t, so pull it and the crumb just doesn’t hold. I’ve had that exact collapse happen in testing.

Reply

Jordan

4.5 net carbs stopped me mid-scroll. Made a batch Sunday and the crumb is way more tender than most almond flour muffins I’ve made. One thing I’d flag: the 2 tablespoons of coconut flour is a precise call, don’t bump it up. Second batch I went to 3 tablespoons thinking more structure, and the texture turned grainy and dry pretty fast. Back at 2 and these are legitimately good.

Reply

Ashley

Trust the 325. I went up to 350 my first batch (every muffin recipe I own calls for it) and the tops browned while the centers were still raw. Dropped back down and they finally set right. That lower temp is why these have actual muffin texture instead of the dense, dry thing almond flour does at higher heat.

Reply

Annie Lampella

The streusel gets you first at 350. Took three batches to commit to 325.

Reply

Tamara

Why isn’t heavy cream in every keto muffin?

Reply

Annie Lampella

Fat keeps the crumb tender in a way that coconut milk just doesn’t. I put it in almost everything now.

Reply

Kendra O.

Drain your pumpkin puree first. Way less dense.

Reply

Annie Lampella

Kendra, I started doing this after a batch came out softer than I wanted. Paper towels for about 10 minutes before measuring.

Reply

Katie

Swapped the golden monkfruit for brown Swerve in the streusel and that depth in the pecan topping is why I’m on batch three in two weeks.

Reply

Annie Lampella

Brown Swerve does something to that pecan streusel the golden monkfruit just can’t get to. Three batches in two weeks tracks.

Reply

Dana

Six batches in and I finally cracked the streusel: brown Swerve instead of golden monkfruit, and the pecans get almost crunchy-sticky. The muffin itself is solid but that top is the whole reason I keep making these.

Reply

Annie Lampella

Six batches means you get to have opinions. If you haven’t toasted the pecans yet, try 5 minutes at 350 and let them cool first. The crunchy-sticky holds up even longer.

Reply

Jason G.

Browned the butter for the streusel before cutting it in and the pecans came out almost candied (that toffee smell about knocked me over when I opened the oven). Not going back to the cold butter method.

Reply

Annie Lampella

That toffee smell is getting me just reading this. Haven’t browned the butter in this streusel yet but now I have to.

Reply

Amanda

Fourth batch since fall and I’m not waiting until October to make them again. The streusel keeps pulling me back (I’ve started making extra just for that part). 325 degrees is right for these, don’t push it higher or the tops dry out.

Reply

Annie Lampella

Making extra streusel just to eat straight is honestly the right call. And 325 is the number, I pushed to 340 once just to see and the tops went from golden to dried out in about two minutes flat.

Reply

Casey

Browned the butter for the streusel instead of cutting it in cold, and the pecan topping went deeply caramelized with an almost toffee richness to it. If your oven runs hot, pull them at 22 minutes because the pecans can tip from perfect to overdone fast. Four stars until I nail the timing on my end, but the direction is right.

Reply

Annie Lampella

Browned butter in the streusel, I hadn’t tried that. That toffee caramel thing you’re describing, I need to test it now. And yeah, pecan streusel in a hot oven goes from perfect to scorched fast, 22 makes sense.

Reply

Rick

Made a batch Saturday morning mostly to use up a can of pumpkin puree I had sitting in the pantry, and my daughter (who has been pretty skeptical about every keto baked thing I’ve attempted) pulled the streusel off the top of her first one and ate it by itself before she even touched the muffin part. That told me more than anything I could say. Only thing I’d note is they run pretty sweet, so I might pull the monkfruit back just slightly next time, but small thing. Good enough that I’m not waiting until fall to make them again.

Reply

Annie Lampella

Ha, that streusel test is better than any review. And yeah, totally fair on the sweetness – 1/3 cup monkfruit instead of the full 1/2 gets you there without changing much else.

Reply

Sarah

Toast the pecans for 5 minutes before mixing the streusel. They stay crunchier on day two and the whole topping smells way more like fall when the muffins come out of the oven. First batch I skipped that step and noticed the difference immediately.

Reply

Annie Lampella

Toasted pecans in the streusel are just better, full stop. That fall smell when they come out is real. I do 350 for 5 minutes and let them cool before mixing in.

Reply

Mei

My sister is allergic to tree nuts and I want to make these for her this weekend. Can I swap the pecans for pumpkin seeds and still get that crunchy buttery topping, or will it just not work?

Reply

Annie Lampella

Replacing pecans alone does not make these nut-free: almond flour is in both the muffin batter and the streusel. I do not have a verified nut-free version of the complete recipe. For a tree nut allergy, choose a recipe developed without those nuts and check every ingredient and cross-contact information.

Reply

Penny Priest

absolutely amazing…so love your channel:)

Reply

Annie Lampella

Ha, these are a fall staple here. Happy you found the channel!

Reply

Margaret Sindaco

Hi, instead of Pumpkin could I not substitute shredded zucchini? I used to make regular zucchini bread and muffins.
Have them in the freezer and want to use them.

Reply

Annie Lampella Recipe author

I haven’t tried zucchini in this muffin recipe yet. You can try it, but you’ll probably need to adjust the flours to get the right batter consistency.

Reply

Nidia Us

These muffins are hands down the best I have ever made. My whole family enjoys having them in the morning. Thank you for the recipe. It has been a life saver since starting Keto.

Reply

Annie Lampella

Ha, whole family on board is the real test with these. Freeze a batch and reheat at 300 for 10 minutes from frozen. Streusel stays crunchy, microwave kills it.

Reply

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