Keto Bagels

Annie Lampella @ Ketofocus

By Annie Lampella, Pharm.D.

Published September 26, 2021 • Updated March 11, 2026

Reader Rating
4.8 Stars (13 Reviews)

This post may contain affiliate links. See my disclosure policy.

I make these keto bagels every week with just almond flour, protein powder, and a few pantry staples. No fathead dough, no mozzarella, just 3.1g net carbs per bagel and a chew that actually reminds me of the real thing.

I started making these because I was tired of every keto recipe starting with fathead dough. I went through a half-dozen mozzarella-based versions before I realized the problem wasn’t my technique. Cheese in the dough just makes everything taste like a cheese roll. I wanted an actual bagel texture, not a cheese ball with a hole in it. That meant building a dough from scratch with almond flour and protein powder, no dairy in the batter at all.

The first batch I got right, I pulled one out of the oven and tore it open while it was still too hot. The inside was springy and slightly dense in the middle, the way a real bagel should be. The outside had a thin crust that crackled when I bit through it. I made three more batches that week just to confirm it wasn’t a fluke. It wasn’t. My reader Corinne went through eight batches to dial in her technique, and she came to the same conclusion I did: keep the dough compact and the chew follows.

The texture comes from how the ingredients work together. Protein powder gives the bagels lift and structure so they don’t come out flat. Inulin keeps net carbs at 3.1g per bagel and adds that dense, chewy center you expect from a real bagel. Xanthan gum is what creates the chewy pull when you tear one apart. If you bake with almond flour at all, you probably already have most of this in your pantry.

My whole week revolves around the Sunday batch. I double the recipe, bake all eight at once, and split them between the fridge and the freezer. The fridge bagels are for the week. I grab one each morning, toast it, and go. Some days it’s a full sandwich with egg, bacon, and cheddar. Most days I just spread butter and eat it on the way out. They hold up to toppings without getting soggy, which is more than I can say for most of the low carb breads I’ve tried. They toast straight from the freezer with no thawing needed, and that’s the part that keeps me coming back to this recipe.

The base dough is plain, but I rotate through flavors depending on the mood. Everything bagel seasoning pressed into the top is my default. Cinnamon with brown sugar free sweetener when I want something closer to a cinnamon roll. Dried onion flakes for sandwich days. I’ve tried all seven variations listed below and the dough handles every one of them.

If you’re building out your keto breakfast rotation, my pumpkin bread and banana bread use similar almond flour bases and freeze just as well. I bake one batch of something new every Sunday and rotate through the week. It keeps breakfast from getting boring without any morning effort.

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Recipe
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Keto Bagels

4.8 (13) Prep 5m Cook 12m Total 17m 4 servings

Ingredients

  • 1 cup almond flour
  • 1/4 cup low-carb protein powder
  • 2 tablespoons inulin powder
  • 1 1/2 teaspoons baking powder
  • 1 teaspoon xanthan gum
  • 1 teaspoon golden brown sugar free sweetener
  • 1/2 teaspoon salt
  • 1 egg
  • 2 tablespoons unsalted butter, melted
  • 2 tablespoons hot water
  • 1 egg white (for egg wash)

Step by Step Instructions

Step by Step Instructions

1
Preheat oven

Preheat oven to 375 degrees.

red 375 on a black background
2
Mix dry ingredients

In a large bowl, add almond flour, protein powder, inulin powder, xanthan gum, baking powder, brown sugar free sweetener, salt. **NOTE: Can use an additional 1/2 cup almond flour in place of the inulin powder. May need to add an additional 2 tablespoons of water.

dry ingredients mixed together in a bowl
3
Add wet ingredients

Mix in egg, melted butter and hot water.

bagel batter in a clear bowl
4
Mold into bagel shapes

Divide dough into four balls. Place balls on a parchment lined baking tray about 2 inches apart. Using your finger make a circle in the center of each ball. Make sure the circle is a little wider than a typical bagel as the bagels will rise and fill in the circle as they bake. Brush with egg white for egg wash to create a shine on top. **NOTE: When handling dough, it’s best to wet your hands or spray oil on them in order to keep the dough from sticking to your hands.

making a hole in the bagel with a finger
5
Bake

Bake bagels at 375 degrees for 10-12 minutes or until golden brown on top.

four bagels on a baking tray
Nutrition Per Serving
253 Calories
20.7g Fat
13.9g Protein
3.1g Net Carbs
6.7g Total Carbs
4 Servings
Nutrition disclaimer

The nutrition information provided is an estimate and is for informational purposes only. I am a Doctor of Pharmacy (Pharm.D.); however, this content is not intended to be a substitute for professional medical advice, diagnosis, or treatment. Always consult your physician or other qualified health provider before making any lifestyle changes or beginning a new nutrition program.

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Keto Bagels

Frequently Asked Questions

Can I use a different flour instead of almond flour?

I've tested this with a few alternatives. Coconut flour absorbs way more liquid, so if you go that route, use about 1/3 the amount and expect a denser result. The version I like best after the original is 1/2 cup almond flour plus 1/4 cup lupin flour. It keeps the net carbs low, though the outside comes out slightly yellow. I haven't found anything that matches pure almond flour for texture in this recipe.

What can I substitute for inulin powder?

I know inulin isn't a pantry staple for most people. My best substitute is using an extra 1/2 cup almond flour (1 1/2 cups total), though I'll be honest, the texture shifts toward a biscuit. You lose some of that chewy, dense center. Psyllium husk powder is another option I've seen readers use successfully. It keeps the moisture and chew closer to the original.

How do I store and reheat these bagels?

I keep mine in a zip-top bag in the fridge for up to 5 days. For longer storage, I freeze them and they hold for about 3 months. When I'm ready to eat one, I drop it in the toaster straight from frozen, no thawing needed. Takes about two minutes and the crust crisps back up perfectly. I do this almost every morning. That's the whole reason I batch-make them on Sundays.

Why did my bagels turn out flat?

This happens when the dough gets spread too thin. I had the same issue early on, and one of my readers (Corinne) nailed the diagnosis after eight batches of testing: she went too thin around batch four and lost all the lift. The fix is keeping the dough balls compact and making the center hole wider than you think you need. The dough rises inward during baking, so if the hole is too small, you end up with a mound instead of a ring. Wet your hands before shaping to keep everything from sticking.

Does the protein powder flavor come through when baked?

It depends on the flavor. I've used vanilla whey and it does come through, especially with savory toppings. If you're spreading cream cheese, you probably won't notice it. But pair it with lox, avocado, or everything seasoning and you'll get a sweet note that doesn't belong. My recommendation is unflavored whey isolate. If vanilla is all you have, it won't ruin them, but you'll taste it.

Are these bagels dairy-free?

Almost. The dough uses butter, but swap in coconut oil and they're fully dairy-free. I've made them with coconut oil a couple of times when I ran out of butter, and the texture held up fine. The flavor shifts a little (slightly nutty from the coconut), but it works.

Can I use Greek yogurt instead of egg and butter?

I've seen the two-ingredient Greek yogurt versions floating around keto sites. I've tried that approach and the texture is completely different. Greek yogurt gives you something soft and bread-like, almost like a dinner roll. What I wanted was chew and crust, which is why I went with protein powder and xanthan gum instead. If you're after a softer quick bread, yogurt works. If you want something that actually tears and toasts like a bagel, this is the version I'd make.

Can I make mini bagels or a loaf with this dough?

I've made minis by dividing the dough into eight balls instead of four. Bake time drops to about 8-9 minutes, and they're great for slider sandwiches. One of my readers (Marie) asked about a full loaf, and I think the dough would handle it. I'd shape it in a small loaf pan and add 5-10 minutes to the bake time. I haven't nailed the exact timing on the loaf version yet, but the dough scales cleanly.

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The Cheese-Free Bagel I Make Every Week

a bite taken out of a bagel with cream cheese

I wanted a low carb bagel that didn’t taste like cheese. Most versions out there use fathead dough, which works for pizza but gives bagels a mozzarella flavor I don’t want at breakfast. These skip the dairy entirely. Almond flour, whey protein, inulin, and xanthan gum are all you need, and the dough comes together in one bowl. What comes out of the oven is soft and slightly springy in the middle with a thin crust that cracks when you bite through it. I split mine, toast them, and go from there: cream cheese and smoked salmon when I have time, just butter when I don’t.

a stack of four bagels, one topped with diced onions

The Flour Combination

I use a combination of almond flour, unflavored protein powder, and inulin powder. The protein powder helps the bagels puff up and hold their shape, while the inulin keeps net carbs at 3.1g per bagel and adds that dense, chewy center you want from a real bagel.

If you don’t have inulin powder, I’ve tested two alternatives. The simplest is using 1 1/2 cups almond flour total instead. It works, but the texture leans more toward a biscuit than a bagel. The other option I’ve tried is 1/2 cup almond flour plus 1/4 cup lupin flour. That keeps the carbs low but gives the outside a slightly yellow tint.

No fathead dough, no mozzarella, no cream cheese in the batter. A lot of keto dough recipes rely on melted cheese or psyllium husk to hold things together. Cheese makes everything taste like a cheese roll. Psyllium gives you density but not lift. Protein powder is what makes these puff up and hold their shape, and the xanthan gum handles the chewy pull. That’s why you don’t need cheese or a heavy binder to make this work.

How I Top Mine

I eat these plain sometimes, but I usually add something. Here’s what I rotate through:

  • butter (my weekday default)
  • cream cheese
  • avocado
  • smoked salmon with capers
  • almond butter
  • peanut butter

They also make a solid base for a breakfast sandwich. I do egg, bacon, and a slice of cheddar most Saturdays.

a breakfast bagel sandwich with egg, cheese and sausage

Flavor Variations

I make the plain version most weeks, but the same base dough works for any flavor. Here are the variations I’ve tested:

  • Everything Bagel: press Everything Bagel seasoning into the top before baking (this is my default)
  • Onion: sprinkle dried chopped onion flakes on top
  • Poppy Seed: add poppy seeds on top (I like to combine poppy and sesame)
  • Cinnamon: mix 1 teaspoon cinnamon and 1 tablespoon brown sugar free sweetener into the batter
  • Cheese: sprinkle shredded cheese on top before baking
  • Pumpkin: swap the butter for 2 tablespoons pumpkin puree
  • Sesame Seed: press sesame seeds into the top before baking

Make Ahead and Freeze

I bake a double batch on Sundays and grab one every morning for the week. They keep in a zip-top bag in the fridge for up to 5 days, or freeze them for up to 3 months and toast straight from frozen. No thawing. Just the toaster, about two minutes, and the crust crisps right back up. Readers ask me about the frozen-to-toaster method constantly, and yes, it works every time.

For a full meal, slice one in half, toast it, and build a sandwich with egg, bacon, and cheddar. Or keep it simple with butter and a cup of coffee. If you like make-ahead breakfasts, my keto french toast freezes and reheats the same way.

About the Author
Annie Lampella, Pharm.D.

Annie Lampella, Pharm.D.

Annie is a Doctor of Pharmacy, mom, and the recipe creator behind KetoFocus. With a B.S. in Genetics from UC Davis, she has over 14 years of experience developing family-friendly keto recipes based on the science of human metabolism.

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Reviews 39
4.8 Stars (13 Reviews)
  1. C
    Camila Mar 1, 2026

    Brought these to a spring brunch and my sister-in-law, who has never once let a keto bake slide, ate two and thought I'd picked them up from a bakery.

    1. Annie Lampella
      Annie Lampella Mar 3, 2026

      The protein powder is what does it. No mozzarella, no weird pull, just actual chew. She probably couldn't place what was off because nothing was.

  2. D
    Dana Feb 21, 2026

    First time making these and I kept second-guessing myself the whole way through because I've only done fathead dough for bagel-type things before. Protein powder holding the dough together was new to me and I wasn't sure how it would behave in something that dry-looking. Came together in about two minutes and I pulled mine at 11 because they were going golden fast. The chew is real. Not a Davidovich bagel, but actual chew, which I stopped expecting from keto bread anything. Had mine with cream cheese and cucumber this morning and it did not turn to mush, which has been the test I keep failing with other recipes. One question though: I have vanilla whey isolate in the pantry right now. Does the flavor of the protein powder actually come through in the bake, or is it neutral enough that vanilla wouldn't matter?

    1. Annie Lampella
      Annie Lampella Feb 21, 2026

      Vanilla does come through a little. With cream cheese you might not notice much, but if you go savory (lox, avocado, everything seasoning) it can be a weird note. Unflavored isolate is the fix, but it won't ruin them.

  3. C
    Corinne Feb 19, 2026

    Batch eight and I'm still tweaking. Somewhere around batch four I went too thin on the dough and they went completely flat, no lift at all, and it took two more batches to figure out that was the whole problem. Back to keeping them compact and the chew is totally different now, actually bouncy in the good way. No cheese in these at all, no fathead, nothing like that, and somehow that makes them taste more like a real bagel. Freezing a double batch this weekend.

    1. Annie Lampella
      Annie Lampella Feb 19, 2026

      Eight batches to nail the thickness is honestly not that many for bagels. Compact dough, that's where the lift comes from. They toast straight from frozen no problem.

  4. R
    Rebecca Feb 16, 2026

    These actually hold together when you slice them. Been making them on Sundays for the week.

    1. Annie Lampella
      Annie Lampella Feb 16, 2026

      The xanthan gum does most of the work there. Sunday bagel batch is smart.

  5. K
    Kate Graham Aug 8, 2024

    Do you have a sub for inulin powder? When I have it in anything it is like I have gastro.. 😞😞

    1. Annie Lampella
      Annie Lampella Aug 14, 2024

      I don't have a sub for this ingredient in this keto bagel recipe but I hope to have a new recipe out soon.

  6. F
    Forefly Jan 24, 2024

    Wow! These turn out so light and fluffy compared to fathead base. Thank you

    1. Annie Lampella
      Annie Lampella Jan 26, 2024

      Right? No mozzarella changes everything. The protein powder is what gives it that lift without the grease.

  7. L
    Lee Mar 21, 2023

    Re. Sweetener Necessary?
    Thank you for this recipe!! I am not a fan of fathead dough especially when there is not alot of fiber in it and wanted something for a hamburger. I just made this and they look good: hamburgers tonight!!! A question: is there a reason for the sweetener or can you leave it out ... I prefer a more savory taste????

    1. Annie Lampella
      Annie Lampella Jan 8, 2024

      Yes, you can omit the sweetener. It was just for flavor.

  8. M
    Melissa Feb 25, 2023

    Easy to make and tasty, but mine turned out more like cakes than bagels. I used the all almond flour as I didn’t have inulin. Wondered what I did wrong. Thoughts?

    1. Annie Lampella
      Annie Lampella Feb 26, 2023

      The inulin definitely makes them chewier. Glad you liked them!

  9. A
    Allen Sep 23, 2022

    Love these, but I think I made them even better. I made the lupin flour version, and added a 1/4 cup of vital wheat gluten. It is really low in carbs., only adds 4 carbs total for all the gluten, but the lupin flour version has less carbs anyway. Not perfectly like a bagel, but better than before. Of course not gluten-free now, but still good. Consider adding wheat gluten, as it only takes a bit.

    1. D
      Debbie Apr 6, 2024

      Did You add the 1/2 cup almond flour, + 1/4 cup lupin flour + 1/4 cup vital wheat gluten. I'm confused about the the amounts of the lupin flour mixture, LOL. Thanks

  10. A
    Allen Aug 21, 2022

    Can you use Whole Psyllium Husk powder for Inulin Powder? Seems like every recipe has a new ingredient that and I only use once? :-)

    1. Annie Lampella
      Annie Lampella Aug 25, 2022

      I haven't tried that substitution. It might work. If you try it let me know how it turns out.

  11. K
    Kalena Aug 7, 2022

    Will this work with a plant based protein powder?

    1. Annie Lampella
      Annie Lampella Aug 13, 2022

      I haven't tried it yet but let me know how it goes if you do!

  12. M
    Marie Mar 19, 2022

    I made a mini version of these. Delicious. Was wondering if it would be possible to make a loaf of bread with these ingredients?

    1. Annie Lampella
      Annie Lampella Mar 29, 2022

      I haven't tried to make a whole loaf, but I think it would work!

  13. B
    Barbara Schlatter Feb 7, 2022

    @ Karen I am so glad that you omitted the INSULIN ! lol.

    1. Annie Lampella
      Annie Lampella Feb 11, 2022

      Ha, that one gets me every time. Inulin is a prebiotic fiber, very different situation from insulin. Though I get the confusion every week in my inbox.

  14. D
    Daniel Nov 9, 2021

    Taste great, low carb, high fat. Cheat on keto! Easy to make.

    1. Annie Lampella
      Annie Lampella Nov 12, 2021

      Not really cheating. 3.1g net carbs, 20g fat each. I make a batch every Sunday.

  15. K
    Krissy Oct 27, 2021

    All I need to do if I do not have whey powder and inulin powder is to add to 1 1/2 cups of almond flour and maybe extra 2 tbsp water?

    1. Annie Lampella
      Annie Lampella Nov 9, 2021

      Yes, you might not need the water. But add the almond flour and see how the consistency is. If it's too dry, then add the water.

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