Keto Neapolitan Cookies
Published September 7, 2020 • Updated February 25, 2026
This post may contain affiliate links. See my disclosure policy.
One dough, three flavors. I split a soft, buttery batch into strawberry, vanilla, and chocolate, then press them together for a sugar-free cookie that looks (and tastes) like low carb Neapolitan ice cream.
Every time I pull these out of the oven, someone says the same thing: “They look like Neapolitan ice cream.” That’s the whole point. Strawberry, vanilla, and chocolate pressed together in one soft, buttery cookie, all from a single batch of dough. I’ve been making these for years and the method hasn’t changed because it just works.
The base is my standard almond flour cookie dough: almond flour, coconut flour, butter, and monk fruit sweetener. Once it comes together, I divide it into three bowls and flavor each one. Vanilla gets extract. Strawberry gets strawberry extract and a couple drops of pink food coloring. Chocolate gets melted sugar-free dark chocolate chips (not cocoa powder, which dries out the dough and gives you a flat brown instead of that rich, deep color).
Here’s what makes these keto neapolitan cookies different from versions you’ll find elsewhere: I weigh 15 grams of each flavor per cookie. That sounds fussy, but it takes about two extra minutes and it’s the reason every cookie comes out with clean, distinct tri-color stripes. Most recipes say “equal parts” and leave you guessing. A kitchen scale removes the guesswork entirely.
The 30-minute chill before baking isn’t optional. This dough is butter-heavy, and if you skip the fridge, the cookies spread into flat puddles and the colors bleed together. I learned that the hard way on my first batch. Cold dough holds its shape at 350 degrees and keeps each color lane crisp. If you’ve made my chewy chocolate chip cookies, you know I’m particular about chilling, and this recipe is where it matters most.
These are low carb cookies that don’t taste like they’re missing anything. The almond and coconut flour combo gives you a tender, slightly crumbly bite, and the butter carries all three flavors beautifully. I’ve served them at birthday parties, packed them in lunches, and brought them to a neighborhood cookout where nobody knew they were keto until I told them. If you want cookie variety, try them alongside my thin mint cookies or small batch sugar cookies for a full spread.
One reader, Samantha, told me her 12-year-old son kept going back for the strawberry sections and actually read the ingredient label afterward to figure out what the flavor was. He never does that. That’s the kind of feedback that tells me strawberry extract (not syrup, not flavoring) is doing its job.
If you want to make these ahead, the dough freezes well. Flash-freeze assembled (unbaked) cookie balls on a sheet pan, then transfer to a freezer bag. Bake straight from frozen, adding 1-2 extra minutes. I do this before holidays so I can pull out exactly how many I need. They also pair perfectly with my ice cream sandwiches if you want to lean into the Neapolitan theme.
How to Make Neapolitan Cookies with Three Clean Color Layers
The trick to these cookies is keeping each flavor layer distinct. I pinch off 15 grams of vanilla, strawberry, and chocolate dough (a kitchen scale makes this fast), press them together side by side, then use a cookie scoop or tablespoon to shape them into a ball. Press the ball flat with the back of a spoon and you’ll see the three stripes right away.
Don’t overwork the dough when you’re pressing the sections together. If you knead or roll them too much, the colors swirl into each other and you lose that clean stripe. I press just firmly enough that the sections stick, then stop. I use this same precision approach for my Christmas tree cookies when the visual matters.
The 30-minute chill before baking is what locks everything in. Cold butter-heavy dough holds its shape in the oven instead of spreading and blurring the color lines. I’ve tried 15 minutes and it’s not enough. If you’re short on time, 20 minutes in the freezer works, but the full 30 in the fridge gives me the best results every time.
Ingredients
3 cups almond flour
1/2 cup coconut flour
1/2 teaspoon salt
1 1/2 cup unsalted butter, softened
1 cup monk fruit blend sweetener
1 teaspoon vanilla
1 teaspoon strawberry extract
pink food coloring
1/4 cup 1/4 cup keto dark chocolate chips, melted
Step by Step Instructions
Step by Step Instructions
Sift dry ingredients
Sift together almond flour, coconut flour, and salt. Set aside. I recommend sifting ingredients as it creates a fine, delicate cookie texture.
Cream butter and sweetener
In a medium bowl, cream together butter and monkfruit using an electric mixer.
Divide and flavor the dough
Separate dough evenly into three bowls. To the first bowl, mix in vanilla extract. In the second bowl, mix in strawberry extract and 2 drops of pink food coloring. In the third bowl, mix in the melted sugar-free dark chocolate.
Prepare the dough
To form the cookies, pinch off equal parts of vanilla, strawberry and chocolate dough (about 15 grams each) and press them together so that they stick together but keep their individual colors. Press the cookie dough into a cookie scoop, tablespoon or roll it into a ball. Place cookie dough ball on a parchment lined baking tray then press down the cookie with the back of a spoon to flatten. Repeat with remaining dough and space cookies about 1 inch apart.
Refrigerate then bake
Move the tray to the refrigerator and chill for 30 minutes before baking at 350 degrees for 8 minutes.
Nutrition disclaimer
The nutrition information provided is an estimate and is for informational purposes only. I am a Doctor of Pharmacy (Pharm.D.); however, this content is not intended to be a substitute for professional medical advice, diagnosis, or treatment. Always consult your physician or other qualified health provider before making any lifestyle changes or beginning a new nutrition program.
Your Macros. Your Recipes. Calculated in 60 Seconds.
Get personalized keto macros and instantly see which recipes fit your targets. No more guessing what to eat.
Get My Macros + Recipes →Frequently Asked Questions
Can I freeze the cookie dough before baking?
I freeze these all the time before holidays. Assemble the tri-color cookie balls, flash-freeze them on a sheet pan for about an hour, then transfer to a freezer bag. When you're ready to bake, put them straight on the tray from frozen and add 1-2 extra minutes to the bake time. I've kept them frozen for up to two months with no texture issues. I also freeze my no bake cookies the same way and they hold up just as well.
Why do these cookies need to chill before baking?
I learned this one the hard way. My first batch went straight into the oven and the cookies spread flat, with all three colors bleeding into a muddy mess. The 30-minute refrigeration firms up the butter so the dough holds its shape at 350 degrees. I've tried skipping this step three separate times hoping it would be fine. It never is. If you're in a rush, 20 minutes in the freezer works, but I prefer the full 30 in the fridge.
Can I use natural food coloring instead of artificial drops?
I've used beet powder for the pink layer and it works. Start with about half a teaspoon and adjust from there. The color is more of a muted rose than a bright pink, which I actually prefer. Just know that beet powder adds a tiny bit of earthiness to the dough, so I bump the strawberry extract up slightly to compensate.
Can I substitute almond flour for a nut-free version?
I've tested sunflower seed flour as a 1:1 swap and it holds up well here because the coconut flour does most of the structural work. The texture comes out slightly denser, but nothing dramatic. My reader Matt made these with that exact swap for Valentine's Day and they turned out fine. If you go this route, just know sunflower seed flour can sometimes react with baking soda and turn green, but these cookies don't have leavening so that shouldn't be an issue.
What can I use instead of monk fruit sweetener?
I've made these with erythritol and with an allulose blend. Erythritol gives you a slightly cooler mouthfeel (that minty-cold sensation some people notice), which is more obvious in a delicate cookie like this. Allulose is my second choice after monk fruit because it browns nicely and keeps the cookies soft. Check the conversion ratio on whatever brand you use since sweetness levels vary.
How should I store these cookies?
I keep mine in an airtight container at room temperature and they stay soft for about a week. After that the edges start drying out. For longer storage, I layer them with parchment paper in a freezer-safe container and they freeze well for up to three months. I pull them out about 10-15 minutes before serving and they taste fresh.
Can I use cocoa powder instead of melted chocolate chips?
I've tried both, and melted chocolate chips are worth the extra step. Cocoa powder alone dries out the chocolate layer and gives you a flat brown color instead of that rich, dark chocolate look. When I use melted sugar-free dark chocolate, the dough stays moist and the color contrast between the three layers is much sharper. If cocoa powder is all you have, use about 2 tablespoons and add an extra tablespoon of softened butter to compensate for the dryness.
These Neapolitan cookies are soft and buttery. Each layer is colored the classic Neapolitan pink, white and chocolate. The pink layer is flavored with strawberry. The white layer is vanilla and the brown layer is chocolate, of course. The combination is just like digging into your favorite ice cream.
They’re easy to make too! Just a few simple ingredients and one batch of dough, instead of three separate cookie doughs. The sugar-free dough gets separated into three equal parts and each is individually flavored – strawberry, vanilla and chocolate. Plus, you don’t need a rolling pin for this recipe. Simply mold the three flavors together in a cookie scoop.
I've tried probably four different keto neapolitan cookie attempts in the last year and they all had the same problem: the strawberry layer just tasted like vanilla with pink food coloring. This one finally gets it right because the strawberry extract actually comes through as its own flavor. I'd go a little heavier on the chocolate portion next time, it blended into the other two for me, but this is the one I'm sticking with.
Chocolate layer is the hardest to keep distinct. Add an extra tablespoon of melted chips and it holds its own against the other two. The strawberry extract was the whole reason I kept testing this one.
My son (12) kept going back to the strawberry ones, which is a win since he's usually the cookie critic in our house. He actually read the ingredients label afterward just to figure out what the strawberry flavor was. He never does that. Four stars from someone who doesn't hand those out easily.
Ha. A 12-year-old reading ingredient labels unprompted is the best review. The strawberry is just extract, which is why it tastes like actual fruit, not candy.
Making these for Valentine's Day but my husband has a nut allergy so almond flour is out. I've used sunflower seed flour in keto baking before with mixed results and think it would hold up here since there's already coconut flour in the dough, but I'm not sure if the texture would fall apart. Has anyone tried this swap with these cookies?
Yep, 1:1 swap works fine! The coconut flour does most of the structural work here, so sunflower seed flour holds up well. Texture will be slightly denser but that's it. Enjoy making them for Valentine's Day!