Keto Neapolitan Cookies

Annie Lampella @ Ketofocus

By Annie Lampella, Pharm.D.

Published September 7, 2020 • Updated February 25, 2026

Reader Rating
4.5 Stars (6 Reviews)

This post may contain affiliate links. See my disclosure policy.

One dough, three flavors. I split a soft, buttery batch into strawberry, vanilla, and chocolate, then press them together for a sugar-free cookie that looks (and tastes) like low carb Neapolitan ice cream.

Every time I pull these out of the oven, someone says the same thing: “They look like Neapolitan ice cream.” That’s the whole point. Strawberry, vanilla, and chocolate pressed together in one soft, buttery cookie, all from a single batch of dough. I’ve been making these for years and the method hasn’t changed because it just works.

The base is my standard almond flour cookie dough: almond flour, coconut flour, butter, and monk fruit sweetener. Once it comes together, I divide it into three bowls and flavor each one. Vanilla gets extract. Strawberry gets strawberry extract and a couple drops of pink food coloring. Chocolate gets melted sugar-free dark chocolate chips (not cocoa powder, which dries out the dough and gives you a flat brown instead of that rich, deep color).

Here’s what makes these keto neapolitan cookies different from versions you’ll find elsewhere: I weigh 15 grams of each flavor per cookie. That sounds fussy, but it takes about two extra minutes and it’s the reason every cookie comes out with clean, distinct tri-color stripes. Most recipes say “equal parts” and leave you guessing. A kitchen scale removes the guesswork entirely.

The 30-minute chill before baking isn’t optional. This dough is butter-heavy, and if you skip the fridge, the cookies spread into flat puddles and the colors bleed together. I learned that the hard way on my first batch. Cold dough holds its shape at 350 degrees and keeps each color lane crisp. If you’ve made my chewy chocolate chip cookies, you know I’m particular about chilling, and this recipe is where it matters most.

These are low carb cookies that don’t taste like they’re missing anything. The almond and coconut flour combo gives you a tender, slightly crumbly bite, and the butter carries all three flavors beautifully. I’ve served them at birthday parties, packed them in lunches, and brought them to a neighborhood cookout where nobody knew they were keto until I told them. If you want cookie variety, try them alongside my thin mint cookies or small batch sugar cookies for a full spread.

One reader, Samantha, told me her 12-year-old son kept going back for the strawberry sections and actually read the ingredient label afterward to figure out what the flavor was. He never does that. That’s the kind of feedback that tells me strawberry extract (not syrup, not flavoring) is doing its job.

If you want to make these ahead, the dough freezes well. Flash-freeze assembled (unbaked) cookie balls on a sheet pan, then transfer to a freezer bag. Bake straight from frozen, adding 1-2 extra minutes. I do this before holidays so I can pull out exactly how many I need. They also pair perfectly with my ice cream sandwiches if you want to lean into the Neapolitan theme.

How to Make Neapolitan Cookies with Three Clean Color Layers

The trick to these cookies is keeping each flavor layer distinct. I pinch off 15 grams of vanilla, strawberry, and chocolate dough (a kitchen scale makes this fast), press them together side by side, then use a cookie scoop or tablespoon to shape them into a ball. Press the ball flat with the back of a spoon and you’ll see the three stripes right away.

Don’t overwork the dough when you’re pressing the sections together. If you knead or roll them too much, the colors swirl into each other and you lose that clean stripe. I press just firmly enough that the sections stick, then stop. I use this same precision approach for my Christmas tree cookies when the visual matters.

The 30-minute chill before baking is what locks everything in. Cold butter-heavy dough holds its shape in the oven instead of spreading and blurring the color lines. I’ve tried 15 minutes and it’s not enough. If you’re short on time, 20 minutes in the freezer works, but the full 30 in the fridge gives me the best results every time.

Recipe
Print Pin

Keto Neapolitan Cookies

4.5 (6) Prep 20m Cook 8m Total 28m 24 servings

Ingredients

Step by Step Instructions

Step by Step Instructions

1
Sift dry ingredients

Sift together almond flour, coconut flour, and salt. Set aside. I recommend sifting ingredients as it creates a fine, delicate cookie texture.

sifting the dry ingredients with a sifter
2
Cream butter and sweetener

In a medium bowl, cream together butter and monkfruit using an electric mixer.

beating the butter and monkfruit together with an electric mixter
3
Add the dry ingredients

Slowly stir in dry ingredients. Mix until combined.

mixing the cookie dough with an electric mixer.
4
Divide and flavor the dough

Separate dough evenly into three bowls. To the first bowl, mix in vanilla extract. In the second bowl, mix in strawberry extract and 2 drops of pink food coloring. In the third bowl, mix in the melted sugar-free dark chocolate.

three bowls with vanilla
5
Prepare the dough

To form the cookies, pinch off equal parts of vanilla, strawberry and chocolate dough (about 15 grams each) and press them together so that they stick together but keep their individual colors. Press the cookie dough into a cookie scoop, tablespoon or roll it into a ball. Place cookie dough ball on a parchment lined baking tray then press down the cookie with the back of a spoon to flatten. Repeat with remaining dough and space cookies about 1 inch apart.

pink and chocolate cookie dough in them
6
Refrigerate then bake

Move the tray to the refrigerator and chill for 30 minutes before baking at 350 degrees for 8 minutes.

three layers of neapolitan cookie dough in a cookie scoop
7
Let cool

Once done baking, remove from the oven and let cookies completely cool on the baking tray before transferring to a wire rack. Don’t attempt to pick up the cookies before they have finished cooling or else the cookies may break and crumble.

keto neapolitan cookie dough on a baking tray
Nutrition Per Serving
199 Calories
19.5g Fat
3.5g Protein
2.1g Net Carbs
5.3g Total Carbs
24 Servings
Nutrition disclaimer

The nutrition information provided is an estimate and is for informational purposes only. I am a Doctor of Pharmacy (Pharm.D.); however, this content is not intended to be a substitute for professional medical advice, diagnosis, or treatment. Always consult your physician or other qualified health provider before making any lifestyle changes or beginning a new nutrition program.

Your Macros. Your Recipes. Calculated in 60 Seconds.

Get personalized keto macros and instantly see which recipes fit your targets. No more guessing what to eat.

Get My Macros + Recipes →

Get weekly keto recipes from Annie.

Join the list and get new recipes delivered to your inbox every week.

Keto Neapolitan Cookies

Frequently Asked Questions

Can I freeze the cookie dough before baking?

I freeze these all the time before holidays. Assemble the tri-color cookie balls, flash-freeze them on a sheet pan for about an hour, then transfer to a freezer bag. When you're ready to bake, put them straight on the tray from frozen and add 1-2 extra minutes to the bake time. I've kept them frozen for up to two months with no texture issues. I also freeze my no bake cookies the same way and they hold up just as well.

Why do these cookies need to chill before baking?

I learned this one the hard way. My first batch went straight into the oven and the cookies spread flat, with all three colors bleeding into a muddy mess. The 30-minute refrigeration firms up the butter so the dough holds its shape at 350 degrees. I've tried skipping this step three separate times hoping it would be fine. It never is. If you're in a rush, 20 minutes in the freezer works, but I prefer the full 30 in the fridge.

Can I use natural food coloring instead of artificial drops?

I've used beet powder for the pink layer and it works. Start with about half a teaspoon and adjust from there. The color is more of a muted rose than a bright pink, which I actually prefer. Just know that beet powder adds a tiny bit of earthiness to the dough, so I bump the strawberry extract up slightly to compensate.

Can I substitute almond flour for a nut-free version?

I've tested sunflower seed flour as a 1:1 swap and it holds up well here because the coconut flour does most of the structural work. The texture comes out slightly denser, but nothing dramatic. My reader Matt made these with that exact swap for Valentine's Day and they turned out fine. If you go this route, just know sunflower seed flour can sometimes react with baking soda and turn green, but these cookies don't have leavening so that shouldn't be an issue.

What can I use instead of monk fruit sweetener?

I've made these with erythritol and with an allulose blend. Erythritol gives you a slightly cooler mouthfeel (that minty-cold sensation some people notice), which is more obvious in a delicate cookie like this. Allulose is my second choice after monk fruit because it browns nicely and keeps the cookies soft. Check the conversion ratio on whatever brand you use since sweetness levels vary.

How should I store these cookies?

I keep mine in an airtight container at room temperature and they stay soft for about a week. After that the edges start drying out. For longer storage, I layer them with parchment paper in a freezer-safe container and they freeze well for up to three months. I pull them out about 10-15 minutes before serving and they taste fresh.

Can I use cocoa powder instead of melted chocolate chips?

I've tried both, and melted chocolate chips are worth the extra step. Cocoa powder alone dries out the chocolate layer and gives you a flat brown color instead of that rich, dark chocolate look. When I use melted sugar-free dark chocolate, the dough stays moist and the color contrast between the three layers is much sharper. If cocoa powder is all you have, use about 2 tablespoons and add an extra tablespoon of softened butter to compensate for the dryness.

Similar Recipes

Others looking for “Keto Neapolitan Cookies” also liked:

Low Carb Neapolitan Cookies Recipe

close up of a bite taken out of a chewy keto cookie These Neapolitan cookies are soft and buttery. Each layer is colored the classic Neapolitan pink, white and chocolate. The pink layer is flavored with strawberry. The white layer is vanilla and the brown layer is chocolate, of course. The combination is just like digging into your favorite ice cream. They’re easy to make too! Just a few simple ingredients and one batch of dough, instead of three separate cookie doughs. The sugar-free dough gets separated into three equal parts and each is individually flavored – strawberry, vanilla and chocolate. Plus, you don’t need a rolling pin for this recipe. Simply mold the three flavors together in a cookie scoop. a bunch of neapolitan cookies on a brown paper with strawberries and chocolate chips nearby

Neapolitan Flavoring

Traditionally Neapolitan flavor is strawberry, vanilla and chocolate – three flavors side by side.
  • Strawberry – To get the strawberry color and flavor, we add a couple drops of pink or red food coloring along with some strawberry extract. You can save 10% off your first order with my code KETOFOCUS-10 at checkout. You can add about 7 drops of the Oooflavor drops or 1 teaspoon of strawberry extract if you are using a traditional strawberry extract you would find at the grocery store. The Oooflavor drops are concentrated. That’s why they require less.
  • Vanilla – The vanilla cookie is flavored by using vanilla extract. You don’t need to add any coloring to this since the cookie dough is already a white Neapolitan color.
  • Chocolate – To add the chocolate flavor, you have a couple of options. The best option is to melt down ¼ cup of dark chocolate sugar-free chips and mix the melted chocolate into the dough. This creates rich chocolate flavor and produces a dark brown coloring. You can also add 2 tablespoons of cocoa powder instead, but the color won’t be as dark as it would with melted chocolate.
three keto cookies dough flavors of strawberry, vanilla and chocolate pressed together to form a cookies on a baking tray

The Best Way to Shape Neapolitan Cookies

Sure you could layer down each flavor on top of the next and roll it into a cylinder to slice; however, I like to pinch off a little of each flavored dough and press it into a cookie scoop, then release onto a parchment lined baking tray. This way, you get a beautiful, unusual pattern with each cookie. It’s best to chill the cookie dough before baking. I like to pop it in the fridge for at least 30 minutes before baking. This allows for the flavors to meld together. Plus the cookies won’t spread as much when you bake them. neapolitan cookies half dipped in dark chocolate

Dip it in Chocolate

This is optional but for a fun variation, dip your low carb Neapolitan cookies in melted dark chocolate and add a sprinkling of sea salt for a pretty presentation!
About the Author
Annie Lampella, Pharm.D.

Annie Lampella, Pharm.D.

Annie is a Doctor of Pharmacy, mom, and the recipe creator behind KetoFocus. With a B.S. in Genetics from UC Davis, she has over 14 years of experience developing family-friendly keto recipes based on the science of human metabolism.

More Dessert Recipes

slice of keto carrot cake
45 Mins
Keto Carrot Cake with Almond Flour
4.9 Stars (95 Reviews)

Almond flour, real shredded carrots, and cream cheese frosting with sour cream. 5.6g net carbs per slice. I make this every Easter and Thanksgiving.

See the Recipe
keto chocolate chip cookie stack
145 Mins
Keto Almond Flour Chocolate Chip Cookies
4.8 Stars (36 Reviews)

I accidentally invented these while making butter bars, and they turned out to be the chewiest almond flour chocolate chip cookies I've ever baked....

See the Recipe
five golden brown chocolate chip cookies on the table with dark chips spread around
16 Mins
Best Keto Chocolate Chip Cookies
4.8 Stars (29 Reviews)

Almond flour and coconut flour together create a keto chocolate chip cookie that's close to Toll House. 1.2g net carbs per cookie. Crispy edges, soft...

See the Recipe
creamy chocolate mousse in a small dish topped with sprinkles and strawberries
3 Mins
Keto Chocolate Mousse
4.9 Stars (13 Reviews)

When a chocolate craving hits, this 3-ingredient mousse saves the day. No cooking, no eggs, and I can have it ready in under 10 minutes.

See the Recipe
A keto pretzel chocolate chip cookie broken open to show a soft center filled with melted chocolate chips and crunchy pretzel pieces.
20 Mins
Keto Pretzel Chocolate Chip Cookies
4.3 Stars (4 Reviews)

These thick, chewy keto pretzel chocolate chip cookies land at about 2g net carbs each. I skip chill time so the pretzel pieces stay crunchy, and six...

See the Recipe
pretty fluted edges on a pie crust
65 Mins
Keto Pie Crust
4.9 Stars (27 Reviews)

I've been refining this recipe since I started keto in 2012. Almond flour, coconut flour, cold butter, and one secret ingredient create a flaky,...

See the Recipe
Reviews 6
4.5 Stars (6 Reviews)
  1. K
    Kelly Mar 2, 2026

    I've tried probably four different keto neapolitan cookie attempts in the last year and they all had the same problem: the strawberry layer just tasted like vanilla with pink food coloring. This one finally gets it right because the strawberry extract actually comes through as its own flavor. I'd go a little heavier on the chocolate portion next time, it blended into the other two for me, but this is the one I'm sticking with.

    1. Annie Lampella
      Annie Lampella Mar 6, 2026

      Chocolate layer is the hardest to keep distinct. Add an extra tablespoon of melted chips and it holds its own against the other two. The strawberry extract was the whole reason I kept testing this one.

  2. S
    Samantha Feb 21, 2026

    My son (12) kept going back to the strawberry ones, which is a win since he's usually the cookie critic in our house. He actually read the ingredients label afterward just to figure out what the strawberry flavor was. He never does that. Four stars from someone who doesn't hand those out easily.

    1. Annie Lampella
      Annie Lampella Feb 21, 2026

      Ha. A 12-year-old reading ingredient labels unprompted is the best review. The strawberry is just extract, which is why it tastes like actual fruit, not candy.

  3. M
    Matt Feb 17, 2026

    Making these for Valentine's Day but my husband has a nut allergy so almond flour is out. I've used sunflower seed flour in keto baking before with mixed results and think it would hold up here since there's already coconut flour in the dough, but I'm not sure if the texture would fall apart. Has anyone tried this swap with these cookies?

    1. Annie Lampella
      Annie Lampella Feb 17, 2026

      Yep, 1:1 swap works fine! The coconut flour does most of the structural work here, so sunflower seed flour holds up well. Texture will be slightly denser but that's it. Enjoy making them for Valentine's Day!

Leave a Review