Protein Cheesecake

Annie Lampella @ Ketofocus

By Annie Lampella, Pharm.D.

Published February 5, 2023 • Updated June 4, 2024

Reader Rating
5 Stars (3 Reviews)

This post may contain affiliate links. See my disclosure policy.

Each slice of this protein cheesecake has over 30 grams of protein so you can satisfy a sweet craving and hit your macro goals.

Think you can’t fit delicious desserts like cheesecake in your diet? Think again! This protein cheesecake has a silky, creamy filling and packs over 30 grams of protein with each slice (1/8 of the cake).  A slice of cheesecake cut out of a whole cake. The slice is slightly pushed out. Fresh berries are nearby. Combining foods that are normally higher in protein, like eggs and yogurt, with a zero carb protein powder, you can make a velvety cheesecake that can easily fit in your macros for the day. This protein cheesecake recipe includes an almond flour based crust that tastes similar to a graham cracker crust; however, the crust is optional. For less calories, just make a crustless cheesecake! The full macro information on a crustless protein cheesecake is below.  Not only is this cheesecake high in protein, but this recipe is low-carb as well. To keep the cheesecake keto and low in sugar, an almond flour based crust is used. Plus sugar-free sweetener is added in place of regular sugar. Most sugar-free sweeteners are zero carb, zero calories and measure cup for cup with sugar.

How to make a protein cheesecake

  1. Make a low-carb cheesecake crust – combine almond flour, coconut flour, baking powder, xanthan gum, salt in a food processor. Then cut in cold butter until coarse crumbled form. Press into the springform pan and bake.
  2. Make cheesecake protein filling – Mix softened cream cheese and low-carb or Greek yogurt until smooth. Then mix in protein powder, sweetener, vanilla and eggs.
  3. Pour on top of the crust and bake at 325 degrees for 45-50 minutes.
  4. Cool for 2-3 hours in the refrigerator before slicing into.
A small slice of cheesecake on a plate topped with blueberries and a raspberry. A full cheesecake sits behind.

Key ingredients

  • “Graham cracker crust” – Most cheesecakes use a graham cracker crust. To be more macro compliant and align with a low-carb, gluten-free lifestyle, this cheesecake recipe includes a graham cracker like crust made from almond flour, coconut flour, butter and a few other ingredients. Add in vanilla or graham cracker flavor extract for flavoring.
  • Cream cheese – For that cheesecake flavor, you have to add cream cheese. It adds to the creamy, silky texture.
  • Yogurt – Using plain Greek yogurt will add additional protein to the cheesecake, plus it will help with the creamy texture. Low carb yogurts can be used as well since they tend to have more protein and lower carbs.
  • Protein powder – Look for a protein powder that is zero carb or low-carb. Use unflavored or vanilla flavored protein powder. The protein powder used in this recipe is whey isolate.
  • Sweetener – Use sugar-free sweetener for a low-carb or sugar free cheesecake. The sweetener should measure cup for cup with regular sugar.
  • Eggs – Eggs are a necessary ingredient in a cheesecake that bakes. It helps the cheesecake to rise. Plus the eggs add protein to the cheesecake.
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Protein Cheesecake

5 (3) Prep 15m Cook 60m Total 75m 8 servings

Cheesecake Crust Ingredients

  • 1 1/4 cup almond flour
  • 3 tablespoons coconut flour
  • 1 tablespoon sugar free brown sweetener
  • 1/2 teaspoon baking powder
  • 1/2 teaspoon xanthan gum
  • 1/4 teaspoon salt
  • 4 tablespoons unsalted butter, chilled and cubed
  • 1 teaspoons vanilla extract

Protein Cheesecake Filling Ingredients

  • 8 oz cream cheese, softened
  • 1 cup Greek yogurt or low-carb yogurt
  • 1 cup protein powder (vanilla or unflavored)
  • 1/2 cup sugar-free sweetener
  • 1 teaspoon vanilla extract
  • 3 eggs

Step by Step Instructions

Step by Step Instructions

1
Preheat oven & prepare pan

Preheat oven to 350 degrees and spray the inside of a 9-inch springform pan with cooking spray or brush with melted butter.

A springform pan sprayed with cooking oil.
Tip See instructions below for making crustless cheesecake. A springform pan is ideal for baking cheesecake; however, you can bake the cheesecake in a pie plate or cake pan if necessary.
2
Dough for cheesecake crust

In a food processer, pulse together almond flour, coconut flour, brown sugar substitute, baking powder, xanthan gum and salt. Add cubed butter and vanilla. Pulse until coarse crumbled form.

Pie crust crumbled in a food processor.
Tip If you don't own a food processor, you can combine the ingredients using a blender or cut the cubed butter into the dry ingredients using a pastry blender or fork.
Ingredients for this step
  • 1 1/4 cup almond flour
  • 3 tablespoons coconut flour
  • 1 tablespoons brown sugar free sweetener
  • 1/2 teaspoon baking powder
  • 1/2 teaspoon xanthan gum
  • 1/4 teaspoon salt
  • 4 tablespoons unsalted butter (chilled & cubed)
  • 1 teaspoon vanilla
3
Bake crust

Press the cheesecake crust into the prepared springform pan. Make sure you press into an even layer along the bottom and a little bit up the sides. Bake at 350 degrees for 9 minutes. Remove from oven to cool. Decrease oven temperature to 325 degrees.

Cheesecake crust pressed into a springform pan.
4
Creamy cheesy yogurt

In a medium bowl, combine softened cream cheese and yogurt using an electric mixer. Mix together until smooth and silky.

A stainless steel bowl with creamy cream cheese mixture inside.
Ingredients for this step
  • 8 oz cream cheese (softened)
  • 1 cup yogurt
5
Finish the filling

Add protein powder, sweetener, vanilla extract and eggs to the cream cheese mixture. Mix until smooth.

A bowl with cheesecake filling inside.
Ingredients for this step
  • 1 cup protein powder
  • 1/2 cup sugar-free sweetener
  • 1 teaspoon vanilla
  • 3 eggs
6
Bake cheesecake

Pour the cheesecake mixture into the pan on top of the crust and bake at 325 degrees for 45-50 minutes or until the edges are set and the center is slightly jiggly. Remove from the oven and let cool at room temperature for 10 – 15 minutes. Slide a knife around the edges to loosen them from the pan before transferring to the refrigerator to cool for 2-3 hours.

A baked cheesecake in a springform pan on a towel.
Tip Cheesecake will continue to set as it cools.
Nutrition Per Serving 1 slice
426 Calories
29.8g Fat
33.2g Protein
3.4g Net Carbs
6.4g Total Carbs
8 Servings
Nutrition disclaimer

The nutrition information provided is an estimate and is for informational purposes only. I am a Doctor of Pharmacy (Pharm.D.); however, this content is not intended to be a substitute for professional medical advice, diagnosis, or treatment. Always consult your physician or other qualified health provider before making any lifestyle changes or beginning a new nutrition program.

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A full protein cheesecake with crust on a plate.

Crustless cheesecake

If this cheesecake is too caloric dense for your allowance, just make it without the crust! Making a crustless cheesecake will not only lower the calories but it will decrease the fat too. To make the protein cheesecake without a crust, simply pour the cheesecake filling straight into the springform pan. Make sure you properly sprayed the pan with cooking oil and lined the bottom and sides with parchment paper. Then bake as instructed above. Macros for a crustless protein cheesecake (per slice):
  • Calories: 252
  • Fat: 14.6 g
  • Protein: 29 g
  • Total Carbs: 1.5 g
  • Net Carbs: 1.5 g
A whole caramel colored cheesecake on a platter topped with fresh berries.

Make it cheesecake more macro friendly

To make your protein cheesecake more macro-friendly, use these guides to adjust the ingredients to fit your macro goals. To decrease the calories:
  • Make a crustless cheesecake as instructed above
  • Use non-fat cream cheese instead of full fat
  • Use Greek yogurt or cottage cheese instead of full fat keto yogurt
  • Look for protein powders that don’t contained added fats or carbohydrates
To decrease the fat:
  • Make a crustless cheesecake
  • Use non-fat cream cheese
  • Use Greek yogurt or 1 cup cottage cheese
To decrease carbohydrates:
  • Make a crustless cheesecake
  • Use zero carb sugar-free sweeteners
  • Use full fat cream cheese
  • Look for full fat yogurt like low-carb yogurts or keto yogurts

Healthy cheesecake toppings

If your New York cheesecake needs a little something extra, consider adding these toppings for a little more flavor.

Storage information

Store the cheesecake in the refrigerator until ready to serve. The cheesecake will keep in the refrigerator for up to 5-7 days. This cheesecake can also be frozen. Tightly wrap cheesecake with plastic wrap and freeze for up to 1-2 months.
Protein Cheesecake

Frequently Asked Questions

How much protein is in cheesecake?

Traditional cheesecake doesn't have much protein in it. Generally a slice of New York cheesecake will have 7-10 g of protein.

How do you know when cheesecake is done baking?

The cheesecake is ready to come out of the oven when the top is golden brown, the edges are set and the center is slightly jiggly when you shaking it back and forth. Cheesecake will continue to firm up as it cools.

Can I make mini protein cheesecakes with this recipe?

Yes, add cheesecake filling to a greased muffin tin and bake at the same temperature but for less time. Check your cheesecakes after 15-20 minutes.

About the Author
Annie Lampella, Pharm.D.

Annie Lampella, Pharm.D.

Annie is a Doctor of Pharmacy, mom, and the recipe creator behind KetoFocus. With a B.S. in Genetics from UC Davis, she has over 14 years of experience developing family-friendly keto recipes based on the science of human metabolism.

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Reviews 3
5 Stars (3 Reviews)
  1. H
    Helen May 19, 2025

    I was surprised by how creamy the texture turned out, even straight from the fridge. The balance between the sweetness and the richness was just right for me. Loved how the top didn't crack and set beautifully.

  2. L
    Liam May 11, 2025

    Turned out really creamy and the crust had a nice texture. I used vanilla protein powder and it worked great. Will definitely make again when craving something sweet but higher in protein.

  3. A
    Alison Mar 14, 2025

    I tried this cheesecake using unflavored protein powder and it turned out really smooth with a nice tang from the yogurt. The crust held together better than I expected for a low carb bake. So happy I can get my protein in without the sugar!!

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